Detailed information of SNP:
SNP ID:
sf1111286968(Gbrowse)
Chromosome: chr11 Position: 11286968 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1360 | 90.51% | 9.49% |
All Indica | 743 | 86.14% | 13.86% |
All Japonica | 497 | 99.20% | 0.80% |
Aus | 64 | 75.00% | 25.00% |
Indica I | 359 | 91.09% | 8.91% |
Indica II | 188 | 78.72% | 21.28% |
Indica Intermediate | 196 | 84.18% | 15.82% |
Temperate Japonica | 335 | 99.10% | 0.90% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1111286968 | A->G | LOC_Os11g19590(LOC_Os11g19590.1) | Synonymous |