Detailed information of SNP:



SNP ID: sf1111286968(Gbrowse)

Chromosome: chr11

Position: 11286968
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1360 90.51% 9.49%
All Indica743 86.14% 13.86%
All Japonica497 99.20% 0.80%
Aus64 75.00% 25.00%
Indica I359 91.09% 8.91%
Indica II188 78.72% 21.28%
Indica Intermediate196 84.18% 15.82%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1111286968 A->G LOC_Os11g19590(LOC_Os11g19590.1) Synonymous