Detailed information of SNP:
|
SNP ID:
sf1111304749(Gbrowse)
Chromosome: chr11 Position: 11304749 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.49% | 4.51% |
| All Indica | 777 | 92.15% | 7.85% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 91.09% | 8.91% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111304749 | G->A | LOC_Os11g19620(LOC_Os11g19620.1) | Non-Synonymous SNP |