Detailed information of SNP:
|
SNP ID:
sf1111308016(Gbrowse)
Chromosome: chr11 Position: 11308016 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 92.67% | 7.33% |
| All Indica | 749 | 87.32% | 12.68% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 345 | 84.35% | 15.65% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 194 | 82.47% | 17.53% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111308016 | A->T | LOC_Os11g19630(LOC_Os11g19630.1) | Non-Synonymous SNP |