Detailed information of SNP:
|
SNP ID:
sf1111316450(Gbrowse)
Chromosome: chr11 Position: 11316450 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1296 | 94.06% | 5.94% |
| All Indica | 716 | 90.36% | 9.64% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 33 | 84.85% | 15.15% |
| Indica I | 339 | 86.43% | 13.57% |
| Indica II | 204 | 98.04% | 1.96% |
| Indica Intermediate | 173 | 89.02% | 10.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111316450 | A->C | LOC_Os11g19650(LOC_Os11g19650.1) | Non-Synonymous SNP |