Detailed information of SNP:
|
SNP ID:
sf1111459414(Gbrowse)
Chromosome: chr11 Position: 11459414 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 55.80% | 44.20% |
| All Indica | 776 | 89.69% | 10.31% |
| All Japonica | 493 | 1.22% | 98.78% |
| Aus | 58 | 79.31% | 20.69% |
| Indica I | 369 | 89.43% | 10.57% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 196 | 88.78% | 11.22% |
| Temperate Japonica | 331 | 1.51% | 98.49% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111459414 | G->A | LOC_Os11g19910(LOC_Os11g19910.1) | SNPs that introduce stop codons |