Detailed information of SNP:
|
SNP ID:
sf1111468242(Gbrowse)
Chromosome: chr11 Position: 11468242 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.83% | 41.17% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111468242 | T->C | LOC_Os11g19930(LOC_Os11g19930.1) | Synonymous |