Detailed information of SNP:
|
SNP ID:
sf1111477137(Gbrowse)
Chromosome: chr11 Position: 11477137 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 96.76% | 3.24% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 406 | 90.64% | 9.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 267 | 85.77% | 14.23% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111477137 | C->T | INTERGENIC | None |