Detailed information of SNP:
SNP ID:
sf1111491227(Gbrowse)
Chromosome: chr11 Position: 11491227 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1415 | 63.89% | 36.11% |
All Indica | 798 | 98.12% | 1.88% |
All Japonica | 497 | 4.43% | 95.57% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 99.20% | 0.80% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 4.78% | 95.22% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1111491227 | G->A | INTERGENIC | None |