Detailed information of SNP:
|
SNP ID:
sf1111524440(Gbrowse)
Chromosome: chr11 Position: 11524440 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1247 | 94.71% | 5.29% |
| All Indica | 633 | 91.15% | 8.85% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 261 | 86.59% | 13.41% |
| Indica II | 188 | 94.68% | 5.32% |
| Indica Intermediate | 184 | 94.02% | 5.98% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111524440 | C->T | LOC_Os11g20030(LOC_Os11g20030.1) | INTRON |