Detailed information of SNP:
|
SNP ID:
sf1111577689(Gbrowse)
Chromosome: chr11 Position: 11577689 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1285 | 94.24% | 5.76% |
| All Indica | 681 | 97.21% | 2.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 15.52% | 84.48% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 132 | 91.67% | 8.33% |
| Indica Intermediate | 181 | 96.69% | 3.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111577689 | G->T | INTERGENIC | None |