Detailed information of SNP:
|
SNP ID:
sf1111614681(Gbrowse)
Chromosome: chr11 Position: 11614681 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 88.32% | 11.68% |
| All Indica | 678 | 81.12% | 18.88% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 58 | 79.31% | 20.69% |
| Indica I | 326 | 89.88% | 10.12% |
| Indica II | 167 | 63.47% | 36.53% |
| Indica Intermediate | 185 | 81.62% | 18.38% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111614681 | G->A | LOC_Os11g20120(LOC_Os11g20120.1) | Synonymous |