Detailed information of SNP:
|
SNP ID:
sf1111616063(Gbrowse)
Chromosome: chr11 Position: 11616063 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 91.72% | 8.28% |
| All Indica | 772 | 86.01% | 13.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 368 | 88.59% | 11.41% |
| Indica II | 201 | 80.60% | 19.40% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111616063 | T->C | LOC_Os11g20120(LOC_Os11g20120.1) | INTRON |