Detailed information of SNP:
|
SNP ID:
sf1111672992(Gbrowse)
Chromosome: chr11 Position: 11672992 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 93.33% | 6.67% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 59 | 49.15% | 50.85% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111672992 | G->A | LOC_Os11g20220(LOC_Os11g20220.1) | Non-Synonymous SNP |