Detailed information of SNP:
|
SNP ID:
sf1111691117(Gbrowse)
Chromosome: chr11 Position: 11691117 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 53.15% | 46.85% |
| All Indica | 784 | 83.55% | 16.45% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 200 | 57.00% | 43.00% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111691117 | A->G | LOC_Os11g20239(LOC_Os11g20239.1) | INTRON |