Detailed information of SNP:
|
SNP ID:
sf1111741202(Gbrowse)
Chromosome: chr11 Position: 11741202 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.51% | 37.49% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111741202 | A->G | LOC_Os11g20330(LOC_Os11g20330.2) | INTRON |
| sf1111741202 | A->G | LOC_Os11g20330(LOC_Os11g20330.1) | INTRON |