Detailed information of SNP:
|
SNP ID:
sf1111817508(Gbrowse)
Chromosome: chr11 Position: 11817508 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 97.46% | 2.54% |
| All Indica | 762 | 95.67% | 4.33% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 350 | 94.29% | 5.71% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111817508 | C->T | INTERGENIC | None |