Detailed information of SNP:
|
SNP ID:
sf1111850478(Gbrowse)
Chromosome: chr11 Position: 11850478 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 88.74% | 11.26% |
| All Indica | 793 | 82.35% | 17.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 208 | 54.81% | 45.19% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111850478 | C->T | LOC_Os11g20470(LOC_Os11g20470.1) | INTRON |