Detailed information of SNP:
|
SNP ID:
sf1111896522(Gbrowse)
Chromosome: chr11 Position: 11896522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1260 | 75.87% | 24.13% |
| All Indica | 644 | 54.50% | 45.50% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 273 | 33.70% | 66.30% |
| Indica II | 190 | 73.68% | 26.32% |
| Indica Intermediate | 181 | 65.75% | 34.25% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111896522 | G->A | INTERGENIC | None |