Detailed information of SNP:
|
SNP ID:
sf1111929213(Gbrowse)
Chromosome: chr11 Position: 11929213 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1321 | 92.96% | 7.04% |
| All Indica | 705 | 87.09% | 12.91% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 81.10% | 18.90% |
| Indica II | 188 | 92.02% | 7.98% |
| Indica Intermediate | 189 | 92.59% | 7.41% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111929213 | T->C | LOC_Os11g20590(LOC_Os11g20590.1) | Non-Synonymous SNP |