Detailed information of SNP:
|
SNP ID:
sf1111939727(Gbrowse)
Chromosome: chr11 Position: 11939727 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 74.17% | 25.83% |
| All Indica | 739 | 62.92% | 37.08% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 64 | 6.25% | 93.75% |
| Indica I | 337 | 79.53% | 20.47% |
| Indica II | 206 | 42.23% | 57.77% |
| Indica Intermediate | 196 | 56.12% | 43.88% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111939727 | G->A | INTERGENIC | None |