Detailed information of SNP:
|
SNP ID:
sf1111955353(Gbrowse)
Chromosome: chr11 Position: 11955353 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 54.65% | 45.35% |
| All Indica | 794 | 87.28% | 12.72% |
| All Japonica | 496 | 3.63% | 96.37% |
| Aus | 63 | 55.56% | 44.44% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1111955353 | T->G | INTERGENIC | None |