Detailed information of SNP:
|
SNP ID:
sf1112013053(Gbrowse)
Chromosome: chr11 Position: 12013053 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 95.37% | 4.63% |
| All Indica | 719 | 91.38% | 8.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 308 | 80.84% | 19.16% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 98.53% | 1.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112013053 | C->T | LOC_Os11g20760(LOC_Os11g20760.1) | INTRON |