Detailed information of SNP:
|
SNP ID:
sf1112086685(Gbrowse)
Chromosome: chr11 Position: 12086685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 92.62% | 7.38% |
| All Indica | 778 | 88.69% | 11.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 201 | 71.14% | 28.86% |
| Indica Intermediate | 202 | 89.11% | 10.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112086685 | C->T | LOC_Os11g21850(LOC_Os11g21850.1) | Non-Synonymous SNP |