Detailed information of SNP:
|
SNP ID:
sf1112087242(Gbrowse)
Chromosome: chr11 Position: 12087242 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112087242 | T->C | LOC_Os11g21850(LOC_Os11g21850.1) | INTRON |