Detailed information of SNP:
|
SNP ID:
sf1112142225(Gbrowse)
Chromosome: chr11 Position: 12142225 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 94.82% | 5.18% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 77.29% | 22.71% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112142225 | G->C | LOC_Os11g21960(LOC_Os11g21960.1) | INTRON |