Detailed information of SNP:
|
SNP ID:
sf1112142307(Gbrowse)
Chromosome: chr11 Position: 12142307 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.12% | 5.88% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 73.33% | 26.67% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112142307 | G->A | LOC_Os11g21960(LOC_Os11g21960.1) | INTRON |