Detailed information of SNP:



SNP ID: sf1112142307(Gbrowse)

Chromosome: chr11

Position: 12142307
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1412 94.12% 5.88%
All Indica796 91.71% 8.29%
All Japonica497 100.00% 0.00%
Aus65 75.38% 24.62%
Indica I375 100.00% 0.00%
Indica II210 73.33% 26.67%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1112142307 G->A LOC_Os11g21960(LOC_Os11g21960.1) INTRON