Detailed information of SNP:
|
SNP ID:
sf1112161143(Gbrowse)
Chromosome: chr11 Position: 12161143 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 58.89% | 41.11% |
| All Indica | 792 | 90.03% | 9.97% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112161143 | A->G | LOC_Os11g21980(LOC_Os11g21980.1) | INTRON |