Detailed information of SNP:
|
SNP ID:
sf1112162656(Gbrowse)
Chromosome: chr11 Position: 12162656 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 53.15% | 46.85% |
| All Indica | 696 | 24.14% | 75.86% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 56 | 23.21% | 76.79% |
| Indica I | 327 | 25.99% | 74.01% |
| Indica II | 189 | 17.99% | 82.01% |
| Indica Intermediate | 180 | 27.22% | 72.78% |
| Temperate Japonica | 333 | 96.10% | 3.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112162656 | T->C | LOC_Os11g21980(LOC_Os11g21980.1) | INTRON |