Detailed information of SNP:
|
SNP ID:
sf1112189030(Gbrowse)
Chromosome: chr11 Position: 12189030 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.54% | 11.46% |
| All Indica | 794 | 81.99% | 18.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 209 | 54.07% | 45.93% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112189030 | C->T | LOC_Os11g22010(LOC_Os11g22010.1) | INTRON |