Detailed information of SNP:
|
SNP ID:
sf1112205605(Gbrowse)
Chromosome: chr11 Position: 12205605 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.19% | 41.81% |
| All Indica | 797 | 31.74% | 68.26% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 212 | 54.25% | 45.75% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112205605 | G->A | LOC_Os11g22030(LOC_Os11g22030.1) | INTRON |