Detailed information of SNP:
|
SNP ID:
sf1112231389(Gbrowse)
Chromosome: chr11 Position: 12231389 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 65.36% | 34.64% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 478 | 5.44% | 94.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 325 | 4.92% | 95.08% |
| Tropical Japonica | 91 | 5.49% | 94.51% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112231389 | T->A | INTERGENIC | None |