Detailed information of SNP:
|
SNP ID:
sf1112244946(Gbrowse)
Chromosome: chr11 Position: 12244946 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 95.99% | 4.01% |
| All Indica | 729 | 93.28% | 6.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 329 | 86.63% | 13.37% |
| Indica II | 197 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 97.54% | 2.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112244946 | T->A | LOC_Os11g22154(LOC_Os11g22154.1) | Non-Synonymous SNP |