Detailed information of SNP:
|
SNP ID:
sf1112254165(Gbrowse)
Chromosome: chr11 Position: 12254165 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 60.27% | 39.73% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 61 | 49.18% | 50.82% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112254165 | G->A | LOC_Os11g22160(LOC_Os11g22160.1) | INTRON |