Detailed information of SNP:
|
SNP ID:
sf1112286624(Gbrowse)
Chromosome: chr11 Position: 12286624 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 92.92% | 7.08% |
| All Indica | 731 | 94.25% | 5.75% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 25.42% | 74.58% |
| Indica I | 366 | 98.09% | 1.91% |
| Indica II | 179 | 87.71% | 12.29% |
| Indica Intermediate | 186 | 93.01% | 6.99% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112286624 | T->C | LOC_Os11g22220(LOC_Os11g22220.1) | Synonymous |