Detailed information of SNP:
|
SNP ID:
sf1112286942(Gbrowse)
Chromosome: chr11 Position: 12286942 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 94.98% | 5.02% |
| All Indica | 754 | 94.16% | 5.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 50 | 68.00% | 32.00% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 184 | 83.15% | 16.85% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112286942 | G->A | LOC_Os11g22220(LOC_Os11g22220.1) | Synonymous |