Detailed information of SNP:
|
SNP ID:
sf1112314933(Gbrowse)
Chromosome: chr11 Position: 12314933 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1306 | 86.83% | 13.17% |
| All Indica | 736 | 79.76% | 20.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 22 | 31.82% | 68.18% |
| Indica I | 350 | 97.14% | 2.86% |
| Indica II | 203 | 50.25% | 49.75% |
| Indica Intermediate | 183 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112314933 | C->T | INTERGENIC | None |