Detailed information of SNP:
|
SNP ID:
sf1112339689(Gbrowse)
Chromosome: chr11 Position: 12339689 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 59.99% | 40.01% |
| All Indica | 785 | 94.52% | 5.48% |
| All Japonica | 495 | 2.83% | 97.17% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 365 | 94.52% | 5.48% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 333 | 3.30% | 96.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112339689 | A->G | LOC_Os11g22336(LOC_Os11g22336.1) | Synonymous |