Detailed information of SNP:
|
SNP ID:
sf1112412114(Gbrowse)
Chromosome: chr11 Position: 12412114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 61.47% | 38.53% |
| All Indica | 793 | 94.83% | 5.17% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112412114 | T->C | INTERGENIC | None |