Detailed information of SNP:
|
SNP ID:
sf1112431003(Gbrowse)
Chromosome: chr11 Position: 12431003 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 77.77% | 22.23% |
| All Indica | 779 | 69.32% | 30.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 367 | 88.01% | 11.99% |
| Indica II | 206 | 43.20% | 56.80% |
| Indica Intermediate | 206 | 62.14% | 37.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112431003 | G->A | INTERGENIC | None |