Detailed information of SNP:
|
SNP ID:
sf1112432829(Gbrowse)
Chromosome: chr11 Position: 12432829 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 57.03% | 42.97% |
| All Indica | 737 | 90.09% | 9.91% |
| All Japonica | 494 | 2.83% | 97.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 330 | 86.67% | 13.33% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 333 | 3.30% | 96.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112432829 | T->C | INTERGENIC | None |