Detailed information of SNP:
|
SNP ID:
sf1112434802(Gbrowse)
Chromosome: chr11 Position: 12434802 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 93.99% | 6.01% |
| All Indica | 750 | 89.20% | 10.80% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 84.96% | 15.04% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112434802 | C->A | INTERGENIC | None |