Detailed information of SNP:
|
SNP ID:
sf1112445061(Gbrowse)
Chromosome: chr11 Position: 12445061 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 95.00% | 5.00% |
| All Indica | 779 | 91.78% | 8.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112445061 | A->G | INTERGENIC | None |