Detailed information of SNP:
|
SNP ID:
sf1112445299(Gbrowse)
Chromosome: chr11 Position: 12445299 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.51% | 31.49% |
| All Indica | 791 | 55.37% | 44.63% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 75.87% | 24.13% |
| Indica II | 210 | 28.10% | 71.90% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112445299 | C->T | INTERGENIC | None |