Detailed information of SNP:
|
SNP ID:
sf1112445344(Gbrowse)
Chromosome: chr11 Position: 12445344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 68.28% | 31.72% |
| All Indica | 787 | 55.15% | 44.85% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 76.01% | 23.99% |
| Indica II | 209 | 27.75% | 72.25% |
| Indica Intermediate | 207 | 45.41% | 54.59% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112445344 | G->A | INTERGENIC | None |