Detailed information of SNP:
|
SNP ID:
sf1112445396(Gbrowse)
Chromosome: chr11 Position: 12445396 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 67.52% | 32.48% |
| All Indica | 785 | 53.76% | 46.24% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 75.82% | 24.18% |
| Indica II | 208 | 27.40% | 72.60% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112445396 | T->C | INTERGENIC | None |