Detailed information of SNP:
|
SNP ID:
sf1112457023(Gbrowse)
Chromosome: chr11 Position: 12457023 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 92.26% | 7.74% |
| All Indica | 757 | 87.19% | 12.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 366 | 95.63% | 4.37% |
| Indica II | 198 | 70.20% | 29.80% |
| Indica Intermediate | 193 | 88.60% | 11.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112457023 | C->T | LOC_Os11g22470(LOC_Os11g22470.1) | INTRON |