Detailed information of SNP:
|
SNP ID:
sf1112477275(Gbrowse)
Chromosome: chr11 Position: 12477275 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 82.41% | 17.59% |
| All Indica | 790 | 77.59% | 22.41% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 371 | 81.40% | 18.60% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112477275 | A->G | LOC_Os11g22510(LOC_Os11g22510.1) | Synonymous |