Detailed information of SNP:
|
SNP ID:
sf1112479563(Gbrowse)
Chromosome: chr11 Position: 12479563 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 91.35% | 8.65% |
| All Indica | 770 | 85.71% | 14.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 366 | 87.43% | 12.57% |
| Indica II | 201 | 83.58% | 16.42% |
| Indica Intermediate | 203 | 84.73% | 15.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112479563 | A->G | LOC_Os11g22530(LOC_Os11g22530.1) | INTRON |