Detailed information of SNP:
|
SNP ID:
sf1112482613(Gbrowse)
Chromosome: chr11 Position: 12482613 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 79.18% | 20.82% |
| All Indica | 788 | 72.84% | 27.16% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 74.46% | 25.54% |
| Indica II | 206 | 79.13% | 20.87% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112482613 | G->C | LOC_Os11g22530(LOC_Os11g22530.1) | INTRON |