Detailed information of SNP:
|
SNP ID:
sf1112485085(Gbrowse)
Chromosome: chr11 Position: 12485085 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1260 | 61.59% | 38.41% |
| All Indica | 648 | 39.35% | 60.65% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 307 | 46.25% | 53.75% |
| Indica II | 170 | 37.06% | 62.94% |
| Indica Intermediate | 171 | 29.24% | 70.76% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112485085 | A->G | LOC_Os11g22530(LOC_Os11g22530.1) | INTRON |